| Issue Date | Title | Author(s) |
| 2008 | An annotated catalogue of the Lepidoptera collection of Guido Lanfranco at the National Museum of Natural History in Malta | Sammut, Paul; Borg, John J. |
| 2010 | Bird ringing report 1997-1999 | Gauci, Mark; Gauci, Charles; Sultana, Joe; Borg, John J. |
| 1999 | Breeding record of Common swift Apus apus | Borg, John J. |
| 1999 | A checklist to the quaternary avifauna of the Maltese islands preliminary note | Borg, John J. |
| 2002 | 'Cross-billed' Cory's shearwaters Calonectrls diomedea | Borg, John J. |
| 2017 | Editorial note : fraud in ornithology | Borg, John J.; Sultana, Joe |
| 2010 | Extended laying period by the European Storm-petrel Hydrobates pelagicus melitensis on Filfla island | Borg, John J.; Sultana, Joe |
| 2019 | Field notes on two stenotopic orthopterans from the central Mediterranean : Brachytrupes megacephalus (Grylloidea gryllidae) and Pamphagus ortolanii (Acridoidea pamphagidae) | Cassar, Louis F.; Conrad, Elisabeth; Borg, John J.; Galdies, Charles |
| 2011 | First description of post-fledging migration of Maltese Cory's Shearwaters Calonectris diomedea diomedea | Raine, Andre; Borg, John J.; Raine, Helen |
| 2010 | First record of the Blue-winged teal Anas discors in the Maltese Islands | Borg, John J. |
| 1999 | First record of the Manx shearwater Puffinus puffinus in Malta : evidence from morphometric data and DNA analysis | Borg, John J.; Sultana, Joe; Heidrich, Petra; Wink, Michael |
| 2010 | First record of the Pygmy cormorant phalacrocorax pygmeus in the Maltese Islands | Borg, John J. |
| 2008 | First record of Xenopsylla gratiosa Jordan & Rothschild, 1923 from the Maltese Islands (Siphonaptera: Pulicidae) | Mifsud, David; Borg, John J.; Sultana, Joe |
| 2010 | First records of the Striped crake Porzana marginalis in the Maltese Islands | Borg, John J.; Cachia, Denis |
| 2002-12 | The grapsid crab Percnon gibbesi (Milne Edwards, 1853) (Crustacea, Decapoda, Brachyura) : a new addition to the marine fauna of Malta | Borg, John J.; Attard-MontaIto, John |
| 2011 | Għar Dalam : a shelter for WWII refugees and military fuel supplies | Borg, John J. |
| 2020 | Identifying light-induced grounding hotspots for Maltese seabirds | Crymble, James; Mula-Laguna, Juan; Austad, Martin; Borg, John J.; Sultana, Joe; Barbara, Nicholas; Tribe, Alice; Lago, Paulo; Metzger, Benjamin |
| 1995 | Il-Friefet il-Lejl | Borg, John J. |
| 1999 | Il-Merill : the ornithological journal of BirdLife Malta no. 29 | Falzon, Mark-Anthony; Borg, John J.; Sultana, Joe |
| 2002 | Il-Merill : the ornithological journal of BirdLife Malta no. 30 | Falzon, Mark-Anthony; Borg, John J.; Sultana, Joe |
| 2005 | Il-Merill : the ornithological journal of BirdLife Malta no. 31 | Borg, John J.; Sultana, Joe |
| 2010 | Il-Merill : the ornithological journal of BirdLife Malta no. 32 | Raine, Andre; Borg, John J.; Sultana, Joe |
| 2017 | Il-Merill : the ornithological journal of BirdLife Malta no. 33 | Borg, John J.; Sultana, Joe |
| 2016 | Il-patrimonju taghna | Farrugia, Mark; Bartolo, David; Ufficju tal-Prim Ministru; Dipartiment tal-Informazzjoni; Coleiro, Mario; Magro Conti, Emanuel; Debono, Alexander; Cassar, Kenneth; Cassar, Robert; Borg, John J.; Debono, Charles |
| 2011 | Mamo’s Door-snail - Dussies ta' Għawdex | Borg, John J. |
| 2008 | Marine special protection areas : A report outlining national mechanisms being used to develop the Marine IBA / SPA programmes across Europe with recommendations for Malta | Raine, Helen; Borg, John J.; Raine, Andre |
| 2003 | Medlycott's drawings of Maltese natural history | Sultana, Joe; Borg, John J. |
| 2020 | New breeding sites of Yellow-legged Gull around the Maltese Islands | Crymble, James; Austad, Martin; Cachia, Denis; Borg, John J.; Galea, Raymond; Mallia, Manuel |
| 2002-12 | Note on the diet of a Grey Long-eared Bat, Plecotus austriacus (Fischer, 1829) from Mdina. Malta (Chiroptera, Vespertilionidae) | Borg, John J.; Sammut, Paul M. |
| 2002 | Note on the moult of a Levantine shearwater Puffinus yelkouan and a Cory's shearwater Calonectris diomedea | Sultana, Joe; Borg, John J. |
| 1999 | Note on the wintering of the Cory's shearwater Calonectris diomedea in the Mediterranean | Borg, John J.; Bonaccorsi, Gilles; Thibault, Jean-Claude |
| 2003 | Notes on the status, distribution and morphology of the pygmy white-toothed shrew Suncus etruscus (Savi, 1822) in Malta (Mammalia, Insectivora, Soricidae) | Borg, John J. |
| 2002 | Partially albinistic European storm-petrel Hydrobates pelagicus melitensis from Filfla | Sultana, Joe; Borg, John J. |
| 2002 | Philopatry in Cory's shearwater Cawnectris diomedea in Malta | Borg, John J. |
| 2002 | Pre-breeding movements and early nest visits by the Levantine shearwater Pufflnus yelkouan in Malta | Borg, John J.; Sultana, Joe; Coleiro, Charles |
| 2008 | Preliminary notes on the early stages of Isturgia pulinda (Walker, 1860) (Lepidoptera: Geometridae) | Catania, Aldo; Seguna, Anthony; Borg, John J. |
| 2000-12 | The presence of Gekkonidae (Reptilia : Squamata) on Fungus Rock and Filfla (Maltese Archipelago) | Sultana, Joe; Borg, John J. |
| 2003 | The presence of the black rat Rattus rattus on Fungus Rock (Maltese Islands) | Borg, John J.; Sultana, Joe |
| 2010 | Rafting behaviour of Yelkouan shearwater Puffinus yelkouan breeding at Rdum tal-Madonna, Malta | Raine, Andre; Raine, Helen; Meirinho, Ana; Borg, John J. |
| 2010 | Re-assessment of the Rock sparrow Petronia petronia record of 1957 | Borg, John J. |
| 2010 | Records in Malta of European Storm-petrels Hydrobates pelagicus melitensis during the breeding season away from known breeding sites | Borg, John J.; Raine, Helen; Raine, Andre |
| 2020 | Remembering Joe Sultana | Borg, John J. |
| 2020 | Remembering Martin Thake | Borg, John J. |
| 2017 | Ringing report 2006 to 2016 | Gauci, Mark; Borg, John J.; Sultana, Joe |
| 2010 | Spotted flycatcher Muscicapa striata tyrrhenica breeding in Malta | Borg, John J. |
| 2002 | Status and distribution of the breeding Procellariiformes in Malta | Borg, John J.; Sultana, Joe |
| 2005 | Systematic list 1996-1999 | Bonavia, Edward; Borg, John J.; Mercieca, Caldon; Sultana, Joe |
| 2010 | Systematic list 2000-2005 | Bonavia, Edward; Borg, John J.; Coleiro, Charles; Gauci, Charles; Johnson, Matt; Raine, Andre; Sultana, Joe |
| 1999 | Trogloxene behaviour by Spanish sparrows Passer hispaniolensis at Ghar Dalam cave, Malta | Borg, John J. |
| 2010 | Yellow-legged gull Larus michahellis preying on Maltese wall lizards Podarcis filfolensis filfolensis on Filfla island | Borg, John J.; Sultana, Joe |
| 1999 | Zitting cisticola Cisticola juncidis breeding in November | Borg, John J. |
